rs31821315 SNP Detail

Summary

• ID
  rs31821315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138815196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CAGCCAGCAT CTAACACCCA
  R
  CACCCAGCAT TCAACATCCA ATACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45574712	mCV24615874	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss147665085	ENSMUSSNP1038663	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31821315					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138815196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbl1	NBL1, DAN family BMP antagonist			Intron
				Noncoding-Transcript-Variant
Rr398632	regulatory region 398632			1500 bp downstream
Rr603100	regulatory region 603100			1332 bp distal
Rr603101	regulatory region 603101			1627 bp distal
Rr603102	regulatory region 603102			572 bp distal
Rr603103	regulatory region 603103			1173 bp proximal