rs31821166 SNP Detail

Summary

• ID
  rs31821166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149393680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAATGTA CACTCCACCT
  TCCCACAAAA GGAGTTGATG TCATTTATTC TGAAACACAC ACAGAATAGA ATTGCTTAAA
  ATATTAGGAG CAACGATTTG AGTGGAAGGT CAGCCTGGGC TACATAGAGA AACCCTGTCT
  TAAACAAACC TAGATGGCTT AGTGGGTAAA GTGCTTCCGA TGAGCTGAGG ATCCCAGTGC
  R
  GTGTCCAGAG CCCGTGTCCA GGTGGATGGA GAGTGCCTGA TGAACACAGT CATCTTCTGA
  CACAGACACA CCTTACACCC CCACTGTACC ATAACAATAA AGTTTAACAG ACATCAATAA
  AATACCTAAA GCAAGAAGTT GGCATGGAAG TGTGGCTAAG TGGGGTGCGC TTGTTTAGCA
  TGTGGGAAGC CCTGACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45574256	mCV24953931	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148031087	ENSMUSSNP4257640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31821166					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149393680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15323	CpG island 15323	781 bp distal
Kif1b	kinesin family member 1B	1530 bp upstream
Rr398866	regulatory region 398866	1247 bp downstream
Rr604876	regulatory region 604876	1728 bp distal
Rr604877	regulatory region 604877	1893 bp distal
Rr604878	regulatory region 604878	1041 bp distal
Rr604879	regulatory region 604879	1294 bp distal
Rr604880	regulatory region 604880	371 bp proximal
Tssr44642	transcription start site region 44642	1520 bp upstream
Tssr44643	transcription start site region 44643	1485 bp upstream