rs31821165 SNP Detail

Summary

• ID
  rs31821165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150650648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGAAG TGTTGAGTTC
  ATGTTCAGTT GCTGGAAGAC ATAAGAAACA GACCATGATC TTAGTGGCTT AGCATTCCTC
  TCTGTAAACA AGTCAGCATG TTAACTATTA AATTACTATC GAAAACATGA AGGTTTTCAT
  GTGGAGACAG GGGTTCACAG AGGGATGGAG TTGCCTGCCT TAGAAGCTAG GCTCACATAC
  Y
  GATGTCATCC AGCTCCTGTG TGCTGAGGGC TTGGCTTTGT TTCGATTATT TCAGAGGCCG
  CTCTGCGTTT CTGGTAAACC ACAAGGTAAA GCCGCCCTGC GAGGCAGATG TCTGGTTGGT
  TTTGAGGCCT GTGGCTTTCC ATAGAGAAGT AACAACACAG GCCACATGAA GCTTTCACTT
  CCTCTTTTTC TTAGAATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45574255	mCV23182721	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148054960	ENSMUSSNP1512690	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31821165					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150650648 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	within coordinates
Rr605335	regulatory region 605335	within coordinates
Tssr40415	transcription start site region 40415	264 bp upstream
Tssr40416	transcription start site region 40416	367 bp upstream
Tssr44743	transcription start site region 44743	673 bp downstream