rs31820885 SNP Detail

Summary

• ID
  rs31820885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGCCTT AAGACACAAG
  GTTGTGTGGC AAGCAAGGCC TGCAGTGGCC AAAACAGAAC ATCTGCTAAA GAAGGCCACA
  CAGTGACCCC TGCAGGTTGC CATGGATGGG AAGGGAAAAC CTGCAGTCCG TCCGTCCATC
  CTCACCAGAA TACTCTACTA AACACACTCC ACCTTTCAAC AGCCCTACAC TGCATGAAGC
  R
  GAGCATGCAC GAACACTCTG GGCGTGGGGG CGGGAGGTGA GGAGTTGCTG TCCCTCGGGT
  CTGGCCACTG ACTACCAGTT CTGAAGATAA CTTCCAGGAA AATCTGGATA CCATACTTCA
  AGGAAGCAGA AACCCTAGTG GATAATACCA TTATCTGACT TCTACTGGAT TCCACCATGA
  ACAGTAGGGA ATTACAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45574430	mCV22902705	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147739732	ENSMUSSNP482877	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss321387746	CHEV_4_141063146	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31820885					SNP	G	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			100 bp distal
Rr603783	regulatory region 603783			152 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant