rs31818376 SNP Detail

Summary

• ID
  rs31818376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGGCTCA GGTTCCTCAC CTGTAAAATC AGAAAATGGG
  GCCAAATGAT CATTAGAGCT CTTCAGCAAA TCTACAATTC TATCACTAAA ATAGCTTGAT
  R
  TTTCACTTTA AGGTTATCCT GGCAAAAGAT ATACCTCCTG ACTTTCAACC TTGAAGAAAT
  TTTGCGAAAC AAAGTTTAGT TTTTCTATGA TAAACCACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45073433	mCV24420966	ABI	CRAMUS_MOUSE	f	SNP	A		G
ss119995986	PARCsnp_1.12070	PARC_SEQ	INBRED	f	SNP		A	G
ss119997586	PARCsnp_1.01062	PARC_SEQ	INBRED	f	SNP		A	G
ss146156146	ENSMUSSNP6676994	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31818376					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019509 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1053 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423237	regulatory region 423237	1855 bp distal
Rr423238	regulatory region 423238	1594 bp distal