rs31816629 SNP Detail

Summary

• ID
  rs31816629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106649352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGGTGGGGG GTGAGAGGTG CAGTTCTGGC TGCTGGTCTA GCAGCAGGTT CAGTGTCTCA
  AGGGAAGAAG AGTGATAGAG CAGGACACTT GATGTCCTCC TCTGGCCTCC GCCAGTATGC
  ACTGCTCACA CGTGTGTGCA AGACACACGT AAACAAAGAA AAAACCAATC AGAATTTCTC
  ACCTACATAC AATACATAAC ACACATATAC ACACAGTTAC ACACATATAT AAATACATAC
  CTACACATAC ATTCTCATAC ATATGTACGT ACACACCACA CACACTCACA CATACACAAC
  Y
  ACATATATAT ACATACATAC ATACATACAT ACATACACAC AATCACATAC ACAGGTACAC
  ACATATATAC ACACATACAC AGACAGACAC ACACACACAT ACACATGCGT GCACACAAAC
  ACTCTCTCTC TCACACACAC ACACTCCTCA CAGGGTATGT TTTAGGGAAG AACAAGATGC
  TAGTCTGGTC TCTTCAGGCC TCATAAGGGA TCTGAAGGAA GTGAGGAGCC ACCTGACTTT
  GGGAAACCAA GGCTGCCTTA TGGAGGCCCA TGGGGAGCTC CCCCTTCAGG CCTCTGACCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45573979	mCV23882611	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31816629					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106649352 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596812	regulatory region 596812	1720 bp distal
Rr596813	regulatory region 596813	641 bp distal
Rr596814	regulatory region 596814	within coordinates
Rr596815	regulatory region 596815	278 bp proximal
Rr596816	regulatory region 596816	1857 bp proximal