rs31812494 SNP Detail

Summary

• ID
  rs31812494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151191254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA CCCAGCTCAG TCCTGAATAC
  W
  GGGCTGAGAG AAGTCTGAAC CGGCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45573828	mCV23459651	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss148064501	ENSMUSSNP1151834	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss321431594	CHEV_4_150480906	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31812494					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151191254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Cpgi15366	CpG island 15366			534 bp proximal
Gm46899	predicted gene, 46899			1065 bp downstream
Rr605507	regulatory region 605507			within coordinates
Rr605508	regulatory region 605508			299 bp proximal
Rr605509	regulatory region 605509			1769 bp proximal
Tssr44784	transcription start site region 44784			1447 bp downstream
Tssr44785	transcription start site region 44785			1657 bp downstream