rs31809533 SNP Detail

Summary

• ID
  rs31809533
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100589802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGTCACTCG GCTACTGCTC CTGTACCTAA GCCGGGAGGC TCACAACTGC CTGTAACTCC
  AACTTCAGAG GATCTGATAT CTGTGGTGTC CATGGCAACT GCACACATAT GTGCATGCAC
  AGGCACACAT GCTGCAGATG TCTGCATCGT TAGGAGCACT GGCTGCTCTT TTAGAGGATC
  TAGGTTCAAG TCCCAGCACC CACATGACAA CTCATAACTC TGTAACTCCA GAGGATCGGA
  CACCCTCACA CAGACATACA AGTAGGCAAA ACACAGAATT AAAAAGAATA AAAATAAATT
  W
  AAAAAAAAAA CAAACAAAAA ACAAAAAAGG AAAGAAAGAA AAAGAGCCTG AGGTGTGTCC
  TGGTGGCCAG AGTAAAATTC CAGCTCTCAG GGGAACCAAT CAGGAAGCAA GCTGGCCAAG
  CTTTACAGAG ATGGGAACTC TGAGGTGAGG AGCCATAGGG CCAACATCAG TGAGTTAGAA
  ACAAAGTCAG ACCCAGAGCT CACCATCCAC AGACACTGGA TACAGAATCG CATGCATTCA
  TCAGGGTCAT TCGTTTGTGC CTTCTTTCTC TTGCTTTGAC CTGCCTGTTA GACACACATA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46071081	mCV24678961	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss145542821	ENSMUSSNP170672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31809533					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100589802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Rr381211	regulatory region 381211			1918 bp upstream
Tssr68182	transcription start site region 68182			1679 bp downstream
Tssr73799	transcription start site region 73799			1776 bp upstream
Tssr73800	transcription start site region 73800			1705 bp upstream
Tssr73801	transcription start site region 73801			1579 bp upstream
Tssr73802	transcription start site region 73802			1546 bp upstream
Tssr73803	transcription start site region 73803			1470 bp upstream
Tssr73804	transcription start site region 73804			1451 bp upstream
Tssr73805	transcription start site region 73805			624 bp upstream