rs31806392 SNP Detail

Summary

• ID
  rs31806392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135665981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTATA CATGAATACT
  GTAGCTGTCT TCAGACACAC ACCAGATCCC ATTACAGATG GTTGTGAGCC ACCGTGTGGT
  TGCTGGGAAT TGAACTCAGG ACTTCTAGAA GAGCAGTCAG TGCTCTCAAC TACTGAGCCA
  TCTCTCCAGC CTCATGGCTA TGTTTTTGTA ACTCCTCTCT CCACCTATGG TCCCAAGCCT
  R
  GGTACCAAAA TCCCACCTAC CTCTCCTCTG CCCAGTTATA AGCTGTTGGC ATCTCTAGTC
  AACCAATAGT TTTAAATTAA GGAACAAGGT CACATAGCAT TACTTTATCT GTACAGATTC
  TCTCATCCCT GGAGGCAACC AGGCCTTGGG GGCCAGTATT TAGCATCACA GTACATAGCA
  AAAGACCAAA CCTCCACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45573000	mCV22566162	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147554405	ENSMUSSNP7112195	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31806392					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135665981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			445 bp proximal
Rr602206	regulatory region 602206			479 bp proximal