rs31804954 SNP Detail

Summary

• ID
  rs31804954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155632945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACA CATGGTCCCA TCTTGCTGGC
  Y
  CTTGACCTTT ATTCCTGAAG GATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45572678	mCV24238413	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148114196	ENSMUSSNP4593595	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321442412	CHEV_4_154922597	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31804954					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155632945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnb1	guanine nucleotide binding protein (G protein), beta 1			Intron
				Noncoding-Transcript-Variant
Rr606495	regulatory region 606495			1049 bp proximal
Tssr40653	transcription start site region 40653			1619 bp downstream
Tssr40654	transcription start site region 40654			1496 bp downstream