rs31801815 SNP Detail

Summary

• ID
  rs31801815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108706401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC ACTGTTGGCC TTCCATCGGG
  R
  TTAAGTCAAC TGTGAGTAGA AACCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45572558	mCV23912256	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147191607	ENSMUSSNP5523717	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321252975	CHEV_4_108521809	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31801815					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108706401 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	585 bp upstream
C030043A13Rik	RIKEN cDNA C030043A13 gene	1662 bp upstream
Cpgi14566	CpG island 14566	301 bp distal
Kti12	KTI12 homolog, chromatin associated	mRNA-UTR
Rr398384	regulatory region 398384	1234 bp downstream
Rr597230	regulatory region 597230	1409 bp distal
Tssr38317	transcription start site region 38317	1309 bp downstream
Tssr38318	transcription start site region 38318	1279 bp downstream
Tssr42741	transcription start site region 42741	799 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron