rs31800637 SNP Detail

Summary

• ID
  rs31800637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:94573122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACAATGCC CCTTTAAAAC CAGTGACTTT TTAAAAGCAC
  TGTTTTCCTT ACTCATAGTC ATATTTGTTT AAAATGAATA CTAAGTGGAA TAAATATCCA
  R
  TTATGGAATT TCTGGGTTTT TTTTGTCCTT CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC
  TTCCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45572856	mCV23203965	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147050754	ENSMUSSNP5699219	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321211749	CHEV_4_94351576	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31800637					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94573122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift74	intraflagellar transport 74			Intron
				Noncoding-Transcript-Variant
Rr595348	regulatory region 595348			1258 bp distal