rs31799245 SNP Detail

Summary

• ID
  rs31799245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT AAAGCTTGAG AGAAATTCGC
  Y
  TTTGTTTATT TTTTAGACAC AGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss46070196	mCV24678678	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145542806	ENSMUSSNP2624514	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss322349745	CHEV_7_108087899	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31799245					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	123 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Intron
Tssr68182	transcription start site region 68182	469 bp downstream
Tssr73796	transcription start site region 73796	1159 bp upstream
Tssr73797	transcription start site region 73797	1094 bp upstream
Tssr73798	transcription start site region 73798	940 bp upstream
Tssr73799	transcription start site region 73799	566 bp upstream
Tssr73800	transcription start site region 73800	495 bp upstream
Tssr73801	transcription start site region 73801	369 bp upstream
Tssr73802	transcription start site region 73802	336 bp upstream
Tssr73803	transcription start site region 73803	260 bp upstream
Tssr73804	transcription start site region 73804	241 bp upstream
Tssr73805	transcription start site region 73805	567 bp downstream