rs31799233 SNP Detail

Summary

• ID
  rs31799233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136036863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGAGG TGCAGACGAA
  GGTCAGAGGA AGAAAGTGAG TGTCCTGCTC TTCCACCCTC CGCCCTGGAG CTAAACTGGC
  AGCAAGCTAC AGCAATTCTC CGGTTGCAGT CTACATCAGC ACTGGAGTTT ACAGGTGCAT
  GCGGTCACGC CAGGCTTTTT ACTCAAGTGG ATGGAGATTC ACAGTCAGGT TTTTTTTTTG
  K
  GGGGGGGCGG GGTTTCGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC TGGAACTCAC
  TCTGTAGACC AGGCTGGCCT GGAACTCAGA AATCCGCCTG ACTGCCTCCC GAGTGCTGGG
  ATTAAAGGCA TGCGCCACCA CTGCCGGGCC ACAGTCAGGA TTTTAAACTT GCATTTGAGC
  CGTCTCTCCA GCCCCTAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45572267	mCV22562775	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31799233					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136036863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	732 bp proximal
Gm13013	predicted gene 13013	1666 bp upstream
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	1390 bp upstream
Rr367756	regulatory region 367756	32 bp upstream
Rr602347	regulatory region 602347	900 bp proximal
Rr602348	regulatory region 602348	1484 bp proximal
Tssr39700	transcription start site region 39700	1384 bp upstream
Tssr39701	transcription start site region 39701	1400 bp upstream
Tssr39702	transcription start site region 39702	1439 bp upstream