rs31788417 SNP Detail

Summary

• ID
  rs31788417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135901189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGGAG TTAGAGGGAG
  GGTTGGGGTG GCTGGTTTCA GCTCTGGTCT TCACTGTGTA TATTTGGATG TCAGGGCCTC
  TGTTTCCTCT TCTTAAAAAA AAAAAGTTTT AAAATTACAT TTATGTGGGG GATGGGACCG
  TTTGTGCCAC ACTGTGTTTG GAGGTCAGAG CACAACTTTT CAGAGTTGGT TTTCTTTTTC
  R
  GAGTGGGTCC TGGGGATCAA ACTCAAGCTG TTCAGCTTGG TGGCAAACTC CTCTACCCAC
  TGAGCCATCT CGCCAGCCCC ACCTTTCCTC TTCTAGAAAA TATATCTTCC TTGGCTTGTC
  TCCTCTGTTA GTTCCAGGTT TGGAAGCAGG TGTCAAGGAG GGGAGATGGT ATTTGTAGGG
  TATGGTAAGT CTAGGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45570868	mCV22914096	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147560433	ENSMUSSNP1342639	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31788417					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135901189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	461 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1424 bp downstream
Rr398609	regulatory region 398609	709 bp upstream
Rr602302	regulatory region 602302	1474 bp distal
Tssr39670	transcription start site region 39670	1590 bp downstream
Tssr39671	transcription start site region 39671	1483 bp downstream
Tssr39672	transcription start site region 39672	1451 bp downstream
Tssr39673	transcription start site region 39673	1436 bp downstream
Tssr39674	transcription start site region 39674	1299 bp downstream
Tssr39675	transcription start site region 39675	1125 bp downstream
Tssr39676	transcription start site region 39676	1018 bp downstream
Tssr39677	transcription start site region 39677	922 bp downstream
Tssr39678	transcription start site region 39678	700 bp downstream
Tssr44029	transcription start site region 44029	1555 bp upstream
Tssr44030	transcription start site region 44030	1274 bp upstream
Tssr44031	transcription start site region 44031	831 bp upstream