rs31786669 SNP Detail

Summary

• ID
  rs31786669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76160765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAATTTGA GGTTCTGAAT CCTTCTGGTT CTGAAAGAAT
  GCATTTATGG GTTAATCTGC AGTGGGCATG TTTTCTGCAG TATAGGGGCT TTCATGATCC
  Y
  TTGTTCCTTA GTTTGGGACT CTATTTTCAA TGGAGCTTTT GGGCTATACT TCTGGGCTCT
  GAGAACAGCA GCAAAGGAAT GTGGCCAGAA GCCTCACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45571304	mCV23138993	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146582509	ENSMUSSNP139601	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31786669					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76160765 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594077	regulatory region 594077			945 bp distal