rs31785459 SNP Detail

Summary

• ID
  rs31785459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:94573781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCATTAGTT ATTAACAGTG ATAAATATTT GCTAAGCAGG
  ATGTCCTTAA GAAATATATA CAATAAATTG TATATTGGTC AAGTAACTAA AATGTTGTGA
  Y
  CAGAAGCTCT AAAAACCTAA AACTAGTCAT ATGAAAGTAT AGAATTTTAA TTGTTGCCTT
  AAATTCTTGT GCTTCAGACA GTCAGCGTCT GCAGCTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45571223	mCV23203953	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147050772	ENSMUSSNP6039969	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321211752	CHEV_4_94352235	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31785459					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94573781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift74	intraflagellar transport 74			Intron
				Noncoding-Transcript-Variant
Rr595348	regulatory region 595348			1917 bp distal