rs31785153 SNP Detail

Summary

• ID
  rs31785153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC AAACTCTGGA CCCTCACCCA
  Y
  GCTGTGCCTG TCAAGGGCGG GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45570635	mCV22914084	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147560404	ENSMUSSNP1390285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321354359	CHEV_4_135727406	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31785153					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898802 () rs orientation: forward

Symbol	Name	Function Class
E2f2	E2F transcription factor 2	903 bp upstream
Rr367754	regulatory region 367754	577 bp upstream
Rr602302	regulatory region 602302	413 bp proximal
Tssr39670	transcription start site region 39670	775 bp upstream
Tssr39671	transcription start site region 39671	876 bp upstream
Tssr39672	transcription start site region 39672	905 bp upstream
Tssr39673	transcription start site region 39673	937 bp upstream
Tssr39674	transcription start site region 39674	1067 bp upstream
Tssr39675	transcription start site region 39675	1175 bp upstream
Tssr39676	transcription start site region 39676	1359 bp upstream
Tssr39677	transcription start site region 39677	1454 bp upstream
Tssr39678	transcription start site region 39678	1676 bp upstream
Tssr44029	transcription start site region 44029	827 bp downstream
Tssr44030	transcription start site region 44030	1110 bp downstream
Tssr44031	transcription start site region 44031	1547 bp downstream