rs31782292 SNP Detail

Summary

• ID
  rs31782292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43960025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA TGCAGGGTGC CACTGAAGAG
  R
  ACAGGACCAG TGTGCAGCAG AGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45570795	mCV24933992	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss146245029	ENSMUSSNP3365729	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321099584	CHEV_4_43972897	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs31782292					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43960025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14202	CpG island 14202	1595 bp distal
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr398233	regulatory region 398233	194 bp downstream
Rr591113	regulatory region 591113	1513 bp distal
Rr591114	regulatory region 591114	1200 bp distal
Rr591115	regulatory region 591115	228 bp distal
Rr591116	regulatory region 591116	within coordinates