rs31781820 SNP Detail

Summary

• ID
  rs31781820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92672628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGAAAA CAGATATAGA
  TAAGTGGTTA AAGCAACCCA GCATCTTATG GCCAGTCGGG AGTGAAGCTG AAACTGAAAT
  AAACCTGGCA CCTGTGCAGG CTGGGAAGTT ATTAACCACA GCTTGGCCTC CAGCTCTCCG
  AATCTATTGG AAACAAAGGA AAAGTGGTGA GTTTGCTGGA AATACTGTGT GTTTAGAATG
  Y
  TTCTCAAGGC TGTTAACATT TCTCAGGTTC TGACATAAAG CCGGTTCTCT CCAGATTTTC
  GTTTTTGTAG GAGCAAAATG AGGTTTGGAT TCTTGGTGGA GGTGGCTTTT GAACTCAACA
  AGGCAATGCC AGCATGTTGC AAAATCTCAG AGCTGTCTGG TTTCCTGGAC CTTGCAACAT
  CGGTTGAACG AGCAGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45798026	mCV23636410	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss46604216	NES10411920	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31781820					SNP	T	T	C	C	C	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604216	NES10411920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92672628 () rs orientation: forward

Symbol	Name	Function Class
Rr614656	regulatory region 614656	59 bp proximal