rs31781819 SNP Detail

Summary

• ID
  rs31781819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92672566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGCTG CATTTAACCC
  TTCCATGACC CTATGAAGAT GATGTTCCAT TCCTATTCTC AAAATGAGAA AACAGATATA
  GATAAGTGGT TAAAGCAACC CAGCATCTTA TGGCCAGTCG GGAGTGAAGC TGAAACTGAA
  ATAAACCTGG CACCTGTGCA GGCTGGGAAG TTATTAACCA CAGCTTGGCC TCCAGCTCTC
  Y
  GAATCTATTG GAAACAAAGG AAAAGTGGTG AGTTTGCTGG AAATACTGTG TGTTTAGAAT
  GCTTCTCAAG GCTGTTAACA TTTCTCAGGT TCTGACATAA AGCCGGTTCT CTCCAGATTT
  TCGTTTTTGT AGGAGCAAAA TGAGGTTTGG ATTCTTGGTG GAGGTGGCTT TTGAACTCAA
  CAAGGCAATG CCAGCATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604215	NES10411918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31781819					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604215	NES10411918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92672566 () rs orientation: forward

Symbol	Name	Function Class
Rr614656	regulatory region 614656	121 bp proximal