rs31781818 SNP Detail

Summary

• ID
  rs31781818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92672522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAAGCC TAACAGCAGA
  TATCCATATA GTAAGATCTC CCTATGTTGT GCTGCATTTA ACCCTTCCAT GACCCTATGA
  AGATGATGTT CCATTCCTAT TCTCAAAATG AGAAAACAGA TATAGATAAG TGGTTAAAGC
  AACCCAGCAT CTTATGGCCA GTCGGGAGTG AAGCTGAAAC TGAAATAAAC CTGGCACCTG
  Y
  GCAGGCTGGG AAGTTATTAA CCACAGCTTG GCCTCCAGCT CTCCGAATCT ATTGGAAACA
  AAGGAAAAGT GGTGAGTTTG CTGGAAATAC TGTGTGTTTA GAATGCTTCT CAAGGCTGTT
  AACATTTCTC AGGTTCTGAC ATAAAGCCGG TTCTCTCCAG ATTTTCGTTT TTGTAGGAGC
  AAAATGAGGT TTGGATTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604214	NES10411915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31781818					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604214	NES10411915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92672522 () rs orientation: forward

Symbol	Name	Function Class
Rr614656	regulatory region 614656	165 bp proximal