rs31779149 SNP Detail

Summary

• ID
  rs31779149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92673053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCACTTC ACTAGGAGAA
  GTTGTTGAAA TGAGAGTCTC TCTGAAGGAG AGACAAGAAG GAAGAAAATG AAGAGAGTCA
  TGGGTCAAAG TGAGTCTTGT GAGACCCAGA CGTGGCCAGT GGCTGTTTCA GCAAGAATAC
  GGATGTGGCA GGGGACTGGC AGATAGCCAA GCTGGGGTTA AGAGAGTTGT GGTAGTCAAT
  R
  GTATGTAGTG ATTAGATAGA GACCAAGACA AACAGCCTAA GGAAAGGACG GTTTGGGCTC
  TGTGGTTTCA GTTTTGGGTC CAAGGCTACT GGTCCGCTGG TTCCCTTCTG GGATGCATGA
  AGCAGAAACC TAGGGCATAC AAGCTTGAGA GAATTGATTT TTAAGCCTCC TGAAAAATGG
  GAGGGAAAAT ACAATGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604222	NES10411928	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31779149					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604222	NES10411928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92673053 () rs orientation: forward

Symbol	Name	Function Class
Rr614656	regulatory region 614656	within coordinates