rs31776924 SNP Detail

Summary

• ID
  rs31776924
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150270152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CCATAGTACT AGGCATACCA
  M
  TGAGTTGTGT ACGTGTGTAT GTGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45569872	mCV24221746	ABI	CRAMUS_MOUSE	f	SNP		A					C		C
ss46712301	NES11002274	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776924					SNP	C	A	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46712301	NES11002274	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150270152 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	1320 bp downstream
Rr605217	regulatory region 605217	818 bp proximal
Rr605218	regulatory region 605218	1025 bp proximal
Tssr40380	transcription start site region 40380	1721 bp upstream
Tssr40381	transcription start site region 40381	1730 bp upstream
Tssr40382	transcription start site region 40382	1748 bp upstream
Tssr40383	transcription start site region 40383	1762 bp upstream
Tssr44720	transcription start site region 44720	1695 bp downstream