rs31774125 SNP Detail

Summary

• ID
  rs31774125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119690368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTTT TTGTGGGCAT
  TAGATATGAA GGGATGGGGA GATGAATGGG ACTGGAATGT ATGATGTGAA ATTCACAAAG
  ATAAAAAAAA TTAAAGAAAA AAGAGTGTGA ACTTTGGGTT GTGCAGTAGC TCAGTGGTAG
  AGTGCTAGCC TACATTTGTA AGGTTCTGGG TTCAATCCCC AGCATCCCTA TTACAAAAAC
  R
  TTAGAAGAAA GTAAAGACCT TTATTGGGGC GTGGGGGTAC AAGCCAGTTA CTCTAGCCTG
  CAGGAGGCTG AGACAAGATG GATACTGTAA GTTGGAGCCA GCTGGAAGTA TAGAGAAAGT
  TCTGGGCCAA CAGGGGCTGT CATAAAACCT TGTACACCTG AAGTTTTTCT CTGGAAGAAG
  CTCCAGATAG AACACTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45569167	mCV25416470	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147336454	ENSMUSSNP4103020	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31774125					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119690368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			1441 bp proximal