rs31773060 SNP Detail

Summary

• ID
  rs31773060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155966138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATCACCT AGAAACAAGC CAAAAAACTT ATAAGAAAAT
  GTCTTACTTG TTCTTTGAAC AACAAAATTC CATTACCTAC AGGAAGTAAC CCTAGGGGTA
  Y
  CAAAAGAAAT GAAATCTGGC AGATGGATGT GTTTCATTTT GCATAATTGG AAAAACTAAA
  GTTTATACAC CATACCATTG ATACGTATTC AGGGTTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45569238	mCV24241494	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148119275	ENSMUSSNP4084533	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321443578	CHEV_4_155255790	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31773060					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155966138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			231 bp distal
Rr606605	regulatory region 606605			1972 bp proximal