rs31772674 SNP Detail

Summary

• ID
  rs31772674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101504815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAACTGTG GGCCGAGCGG
  AACCGGGCCC GGCAGAGGAG GAGCTCAGAG TGGCAGGGAT CAGAACCAGT ATAGGAAATA
  CTGAGTGCCT GTAGGGCAGA ATCTGGCATA ATTGGGTGTG AGGTTGTAAT TGGCAGAATT
  CTAAACCAGT AGGAATCAGG TTCTGCATGG ATGGTGGGAT TGGGCTTCTG GGGGCGGGAA
  R
  CCACGGGATG GGGCGGAGTC TAAAATCAGG GGCGGGGCCT AATGAAGGGG CGGGGCTCCG
  TTGGTTGGGT AGGAAGTCAA TACCGTCAGG GGGCGGGCCG GGCTTTGGAT TCGCGCGCCG
  GCCCTGGCTA GTCTGGGTGT GGGCGGCTTT TGGAGAAAGC CGGAAGCAGC GACAGCCCCA
  GCTCCAGAGA CATGGCGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45569148	mCV22762445	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147124692	ENSMUSSNP6968384	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss321230716	CHEV_4_101320223	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31772674					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101504815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	within coordinates
Leprot	leptin receptor overlapping transcript	107 bp upstream
Rr367655	regulatory region 367655	197 bp downstream
Rr398357	regulatory region 398357	within coordinates
Rr596187	regulatory region 596187	within coordinates
Rr596188	regulatory region 596188	269 bp distal
Rr596189	regulatory region 596189	79 bp proximal
Rr596190	regulatory region 596190	186 bp proximal
Tssr38009	transcription start site region 38009	58 bp upstream
Tssr38010	transcription start site region 38010	94 bp upstream
Tssr38011	transcription start site region 38011	124 bp upstream
Tssr38012	transcription start site region 38012	145 bp upstream