rs31772278 SNP Detail

Summary

• ID
  rs31772278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135001455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGGCAG TGGCCTTAAA
  CACCCTAAAC CTCGGCCTGA TTTGGTGACA TATACGTGGC TCTCAGGTGA TGGCTCAGGC
  AGGAGGGCTG AGAGTTTGAG GACAGTCTGG GTATATTGCA AGACTACCTC AAAATAATAA
  TAATAATAAT AATAATAATA ATAATAATAA TGGCAGTCAA GATGATTCAG CAGGTAAAAG
  Y
  GTTTGCCTTG CAAGACTTCC AACCTGGATG TGATGTTGGG GCCATCTAAA GGTAGAAGGA
  GAAAACCAAC TCCAGAAAGC TTACCTCTGA CTTCTACAGA ATGCCATCAC ACACACACAC
  ACACACACAC ACACACACAC CAGGGTTTGG GTTTTGGTCT GCCTGTTTTT TTTCTCCACC
  TCCCAAGTAC TAGGGTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45569326	mCV25366064	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147543323	ENSMUSSNP1609838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31772278					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135001455 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	1384 bp upstream
Cpgi15068	CpG island 15068	521 bp distal
Rr398589	regulatory region 398589	953 bp downstream
Rr601975	regulatory region 601975	1341 bp distal
Rr601978	regulatory region 601978	1674 bp distal
Rr601979	regulatory region 601979	1331 bp distal
Rr601980	regulatory region 601980	840 bp distal
Rr601981	regulatory region 601981	1015 bp distal
Rr601982	regulatory region 601982	400 bp proximal
Tssr39607	transcription start site region 39607	1962 bp downstream
Tssr43973	transcription start site region 43973	1427 bp upstream
Tssr43974	transcription start site region 43974	1397 bp upstream
Tssr43975	transcription start site region 43975	1371 bp upstream
Tssr43976	transcription start site region 43976	1352 bp upstream
Tssr43977	transcription start site region 43977	1325 bp upstream