rs31769991 SNP Detail

Summary

• ID
  rs31769991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132650158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTGAAAAG AGCGTCTTCC GAGTAGGATA GCGGAAGCCC
  TCGGGCTCCG CCCACCTGCC CGCTGAGGCT CCGCCCTCGC TCCGCCTCTC CGGGGGCTGC
  S
  GGAGCATTGG AGCTTCTCGC GATACTCGAT GAAGTTGTGA TGTTTTGGGT TGCCGTGGAG
  CTTCCCGCTA GCCGAAGGAG TGTGGGATTG GGGTGACAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45569296	mCV24820039	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss147479339	ENSMUSSNP3092943	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321337436	CHEV_4_132478762	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31769991					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132650158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	within coordinates
Fam76a	family with sequence similarity 76, member A	309 bp upstream
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	within coordinates
Rr601111	regulatory region 601111	365 bp distal
Rr601112	regulatory region 601112	within coordinates
Rr601113	regulatory region 601113	324 bp distal
Rr601114	regulatory region 601114	98 bp distal
Tssr43726	transcription start site region 43726	1700 bp upstream
Tssr43727	transcription start site region 43727	303 bp upstream
Tssr43728	transcription start site region 43728	284 bp upstream
Tssr43729	transcription start site region 43729	246 bp upstream
Tssr43730	transcription start site region 43730	234 bp upstream
Tssr43731	transcription start site region 43731	221 bp upstream
Tssr43732	transcription start site region 43732	216 bp upstream