rs31768447 SNP Detail

Summary

• ID
  rs31768447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149238538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TCATTCGCAC CTCAGAGACG
  Y
  GAGAGAGGGT GACAGAACGG GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45569090	mCV22641304	ABI	CRAMUS_MOUSE	f	SNP		T	T				T		C
ss46700496	NES10944847	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C		C	C	C	T		C	T	C		T
ss148029167	ENSMUSSNP5967741	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321425101	CHEV_4_148528190	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31768447					SNP	T	T	T	C	T	C	T	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46700496	NES10944847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149238538 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr604846	regulatory region 604846	950 bp proximal
Rr604847	regulatory region 604847	1342 bp proximal
Rr604848	regulatory region 604848	1664 bp proximal
Tssr44628	transcription start site region 44628	97 bp upstream
Tssr44629	transcription start site region 44629	132 bp downstream