rs31766308 SNP Detail

Summary

• ID
  rs31766308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88769563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCATCC ATTCATGGTT
  AATTCCTACG TCTTTTCTTT TCTCCTGTGT ATTGTATTCT TCTGAATGCC CAGACAACAC
  ACTGTTCAGG GATCAGGCAT AAGATCTTGC TCCTGTCAAA CTGTGTAAAG GGATCGGTAT
  TTCTACAAGA CACTCCACAA CCATGTTCTT AGCACAAAGG TCATTTACCT GACCTGGAAA
  R
  ACAAAGGACC AAGAATAAGA CAAGGACAGG CGATAGAGGA CTAGGGAGAA GGGGAAGGGA
  AGAAGGAAGA AGGGGAAGAG ATACTGTCCT GGGGGTGGGA GCACAAAGGA CTCCCTCTGG
  ATAGAGAGGA AGCAAACATG GCCCATAGGC AGATGGCAAT TAATAAAAGT AAAAGGAGGG
  AAACCTCTGT TAGGATGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45568350	mCV23963664	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146941474	ENSMUSSNP4124622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321204010	CHEV_4_88497230	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31766308					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88769563 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	375 bp distal
Ifna1	interferon alpha 1	670 bp downstream
Rr595123	regulatory region 595123	within coordinates