rs31766036 SNP Detail

Summary

• ID
  rs31766036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100589917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA ACCAATCAGG AAGCAAGCTG
  R
  CCAAGCTTTA CAGAGATGGG AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47086778	NES11604438	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	G	A	A		G	G	A	G		A
ss145542829	ENSMUSSNP5785596	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss322349751	CHEV_7_108089224	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31766036					SNP	A	A	A	A	A	G	G	G	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086778	NES11604438	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100589917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19492	CpG island 19492			1448 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Rr381211	regulatory region 381211			1803 bp upstream
Tssr68182	transcription start site region 68182			1794 bp downstream
Tssr73799	transcription start site region 73799			1891 bp upstream
Tssr73800	transcription start site region 73800			1820 bp upstream
Tssr73801	transcription start site region 73801			1694 bp upstream
Tssr73802	transcription start site region 73802			1661 bp upstream
Tssr73803	transcription start site region 73803			1585 bp upstream
Tssr73804	transcription start site region 73804			1566 bp upstream
Tssr73805	transcription start site region 73805			739 bp upstream