rs31765852 SNP Detail

Summary

• ID
  rs31765852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43958760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA AGGCTTCCTA TTTATTAGAA
  Y
  ATCATCCGTG CCTCATGGGA GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45568267	mCV24933994	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146245021	ENSMUSSNP1607935	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321099580	CHEV_4_43971632	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31765852					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43958760 () rs orientation: forward

Symbol	Name	Function Class
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr367610	regulatory region 367610	1373 bp downstream
Rr398233	regulatory region 398233	770 bp upstream
Rr591111	regulatory region 591111	1058 bp distal
Rr591112	regulatory region 591112	1384 bp distal
Rr591113	regulatory region 591113	248 bp distal
Rr591114	regulatory region 591114	within coordinates
Rr591115	regulatory region 591115	755 bp proximal
Rr591116	regulatory region 591116	1038 bp proximal
Tssr37004	transcription start site region 37004	1264 bp downstream
Tssr37005	transcription start site region 37005	1233 bp downstream
Tssr37006	transcription start site region 37006	1025 bp downstream