rs31765200 SNP Detail

Summary

• ID
  rs31765200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACTCCA GTAAAGCTAA
  AGCTTGAGAG AAATTCGCTT TTGTTTATTT TTTAGACACA GGGTTTCTCT GTGTAGCCTT
  GGCTGCCCTG AAGCTCACTC TGTAGATCAG GCTGGCCTGG AAATCACAGA GCTCCCCTGA
  CTCTGCCTCC CAAGTGCTGG GATGAAAGGC CTGTGGCACC ACCCTGGCCC AAGTCGATTT
  Y
  TTTCTGTCCT ATTTATTTCC TCTCAGCTTC TCCTCATGAA GTTCTGCTCA GCCCTCAGAA
  CTCTAGTCAA ATGTCTCTTC TATGAGAATT CATTGATGGG CTTCCGTTCA AATCACAGGT
  ACTTAGTGCC TGCATGATCT TGGGGGCAGG GATTTACCTT CTGGCTTCCC AATCTGAGCA
  GAAAGGTTAG AAGCACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47086772	NES11604512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31765200					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086772	NES11604512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19492	CpG island 19492			285 bp distal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6			Intron
				Noncoding-Transcript-Variant
Tssr68182	transcription start site region 68182			631 bp downstream
Tssr73796	transcription start site region 73796			1321 bp upstream
Tssr73797	transcription start site region 73797			1256 bp upstream
Tssr73798	transcription start site region 73798			1102 bp upstream
Tssr73799	transcription start site region 73799			728 bp upstream
Tssr73800	transcription start site region 73800			657 bp upstream
Tssr73801	transcription start site region 73801			531 bp upstream
Tssr73802	transcription start site region 73802			498 bp upstream
Tssr73803	transcription start site region 73803			422 bp upstream
Tssr73804	transcription start site region 73804			403 bp upstream
Tssr73805	transcription start site region 73805			405 bp downstream