rs31765136 SNP Detail

Summary

• ID
  rs31765136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189858260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCTTGT AAGTGGTTTC
  AGTGTGTTGT CCCCATCATG AGGTGTCCTA GCTGAGAAGC CCAGGTCTTT ATTCTGTGTC
  ACCTACATGT TCCTTAGGAG AGCTTTTATT ATTCCACAAA CACTGTTGTC CTTCACGAGG
  AGATGACCCC CCCCCCCCCT GCTCCATCCC ATAGTGCTCT GTAGTCTACT GGTATGCTCC
  Y
  GCAAGGCTTT GAGGAAAGAA ACCCAGAGCT GGGTACAGCT CAGTGGTGCG GTATTTGCCT
  GGCCTGCATG AGGTTTAATC CTCAGTACCA CTACAACAAA ACAAATCAAA AAACAAAAAG
  CCTCAAAGAA GCAAATTAAT GAAAAGATAT AGTTTTAAGT AACACAAATC TTAGAAAACA
  TTTTATGGAT GAAAAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45067554	mCV23934060	ABI	CRAMUS_MOUSE	f	SNP	C	T					C	C
ss46765155	NES10646935	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	T		C	C	C	C	C	C	C	C
ss146496130	ENSMUSSNP7003946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31765136					SNP	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765155	NES10646935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189858260 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425914	regulatory region 425914	697 bp distal
Rr425915	regulatory region 425915	396 bp distal
Rr425916	regulatory region 425916	1214 bp proximal