rs31764342 SNP Detail

Summary

• ID
  rs31764342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCAGGT TCAGGGTGTA
  CACAGCGGAA CGGGTCAGGG TCCGGCGGGA TGCGCAGATC TGGGCAATGA CGCAGATGTT
  CAGTGGCAGG CCGACCACCA GCACCACCGA GTATACCGGG GTTAGCAGCA GTCGCTTGAA
  ATCCTCACGG TAGACGCAGG TGGTGGGCGG CAAGCCTGGA GCCTGGATGG TGCCATTGTC
  Y
  TGCTCCATAA CTGCCTGTCA GCCTTTCCTA TGCTCGGAGA GTCTGGGGAA GCAATACACA
  CCCTTTCAGT AGCATGCTCA CTGGCAACCC CGTTCTTTCG CCCCGCGCCT TCATCTCACT
  GTCTGAACAA TTATGTCTTT AATTATGTCA TCTCTTAGCC TCATCACCCC ATAAAGATCC
  ATACTGATGT CATATCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47086763	NES11604590	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31764342					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086763	NES11604590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	within coordinates
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Coding-Synonymous
Tssr68182	transcription start site region 68182	226 bp downstream
Tssr73796	transcription start site region 73796	916 bp upstream
Tssr73797	transcription start site region 73797	851 bp upstream
Tssr73798	transcription start site region 73798	697 bp upstream
Tssr73799	transcription start site region 73799	323 bp upstream
Tssr73800	transcription start site region 73800	252 bp upstream
Tssr73801	transcription start site region 73801	126 bp upstream
Tssr73802	transcription start site region 73802	93 bp upstream
Tssr73803	transcription start site region 73803	17 bp upstream
Tssr73804	transcription start site region 73804	within coordinates
Tssr73805	transcription start site region 73805	810 bp downstream