rs31764339 SNP Detail

Summary

• ID
  rs31764339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100588025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCACACAG TGCGGTTGCG
  CTGGATGCCT GTGGCAGCAA AGACTGCCGT GGGCAGGCAC TGGGCTGTCA CAGCCAGCCA
  CACGACTCCA CACACTACCC AAGCAGCACG GCGACCTCCA CGCTTGTGCC AGGAAGCCAG
  GGGGTGGCAG ATGCCCAGGT AGCGCTGGAA GCTAATGCAG GTGAGGAACA GGATGCTGCC
  R
  TGTAGATTGG CATAGAAGAG GAAGCGTACA AAGCGGCAGG CGAGGTCTCC GAAGGGCCAG
  TGGTCCCCTC TGGCGTAGTT ATAGATAAGT AGGGGTAGTG AACAGGCATA CATCAGGTCC
  GCCAGTGCCA GGTTCAGGGT GTACACAGCG GAACGGGTCA GGGTCCGGCG GGATGCGCAG
  ATCTGGGCAA TGACGCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47086760	NES11604589	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31764339					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086760	NES11604589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100588025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	within coordinates
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Coding-Synonymous
Tssr68182	transcription start site region 68182	62 bp upstream
Tssr73796	transcription start site region 73796	592 bp upstream
Tssr73797	transcription start site region 73797	527 bp upstream
Tssr73798	transcription start site region 73798	373 bp upstream
Tssr73799	transcription start site region 73799	within coordinates
Tssr73800	transcription start site region 73800	10 bp downstream
Tssr73801	transcription start site region 73801	79 bp downstream
Tssr73802	transcription start site region 73802	209 bp downstream
Tssr73803	transcription start site region 73803	288 bp downstream
Tssr73804	transcription start site region 73804	310 bp downstream
Tssr73805	transcription start site region 73805	1134 bp downstream