rs31764336 SNP Detail

Summary

• ID
  rs31764336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:100587920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAACAAG CCAGTAAGGC
  TATGAAGGGC AGCAAGAAGC CGATGACCGT GAGGGCCATA CCATAGGGCA GGTAGCGAGT
  AGACAGGATG GGTGGGCTCA GGTCGTAGCA CACAGTGCGG TTGCGCTGGA TGCCTGTGGC
  AGCAAAGACT GCCGTGGGCA GGCACTGGGC TGTCACAGCC AGCCACACGA CTCCACACAC
  Y
  ACCCAAGCAG CACGGCGACC TCCACGCTTG TGCCAGGAAG CCAGGGGGTG GCAGATGCCC
  AGGTAGCGCT GGAAGCTAAT GCAGGTGAGG AACAGGATGC TGCCATGTAG ATTGGCATAG
  AAGAGGAAGC GTACAAAGCG GCAGGCGAGG TCTCCGAAGG GCCAGTGGTC CCCTCTGGCG
  TAGTTATAGA TAAGTAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47086757	NES11604588	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31764336					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086757	NES11604588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100587920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	within coordinates
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	Coding-Synonymous
Tssr68182	transcription start site region 68182	167 bp upstream
Tssr73796	transcription start site region 73796	487 bp upstream
Tssr73797	transcription start site region 73797	422 bp upstream
Tssr73798	transcription start site region 73798	268 bp upstream
Tssr73799	transcription start site region 73799	86 bp downstream
Tssr73800	transcription start site region 73800	115 bp downstream
Tssr73801	transcription start site region 73801	184 bp downstream
Tssr73802	transcription start site region 73802	314 bp downstream
Tssr73803	transcription start site region 73803	393 bp downstream
Tssr73804	transcription start site region 73804	415 bp downstream
Tssr73805	transcription start site region 73805	1239 bp downstream