rs31763650 SNP Detail

Summary

• ID
  rs31763650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100586634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCCCCTCC ACCTCAAGCT ACCCTGGGGC TGACCCTCCC
  CAGGTGGTCA GCCATCTTTA AGATGCCTCC TGGGTATGTC TAACCCTTGT TCTTTGTTCC
  Y
  GTCAGGTTCC AGCATACATC CTGACCCCTA ACCCAGTTAA ATCATTGCCT GCTTTTCATC
  TAGGGATGAT GACTGAAGGA TTCATTTTGT CTCAGCAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46117850	mCV24678645	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss47086751	NES11604670	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C	T	C	C	C	C
ss145542779	ENSMUSSNP6777319	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31763650					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47086751	NES11604670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100586634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	768 bp proximal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	203 bp downstream
Tssr68182	transcription start site region 68182	1453 bp upstream
Tssr73796	transcription start site region 73796	783 bp downstream
Tssr73797	transcription start site region 73797	855 bp downstream
Tssr73798	transcription start site region 73798	1004 bp downstream
Tssr73799	transcription start site region 73799	1372 bp downstream
Tssr73800	transcription start site region 73800	1401 bp downstream
Tssr73801	transcription start site region 73801	1470 bp downstream
Tssr73802	transcription start site region 73802	1600 bp downstream
Tssr73803	transcription start site region 73803	1679 bp downstream
Tssr73804	transcription start site region 73804	1701 bp downstream