rs31762604 SNP Detail

Summary

• ID
  rs31762604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138282020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCCTTCC ACACTCCCTT GCGTCAGTTC ATTCTATCTC
  CCCACCCCCA CCCACTCCCA CAATTCCCGA GACAAGGTCT CACTATGTAG CTCTGGCTGT
  Y
  ATGAAACTTA CTATGTAGAC CAGGCCTGCC TTTGCCTCCT GAGTAGCGAG ATTAAAGACA
  TGAACCACTA CATCCGACCC ATTCCGTACT TTTTCTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45568598	mCV23281980	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147650106	ENSMUSSNP5271529	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321374830	CHEV_4_138110624	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31762604					SNP	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138282020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15154	CpG island 15154	68 bp proximal
Cpgi15155	CpG island 15155	763 bp proximal
Rr602963	regulatory region 602963	804 bp distal
Rr602964	regulatory region 602964	within coordinates
Rr602965	regulatory region 602965	349 bp proximal
Rr602966	regulatory region 602966	863 bp proximal