rs31761381 SNP Detail

Summary

• ID
  rs31761381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152548282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGCTCA TCCCTAGGTC
  TTCCCTCAAG TCCACAGTGT GAATCTGTCC TCCTAGGAGG AAGCCAGCCT GGTGCTCTAG
  ACAGAAAGTT CATACCATCA TCTGCTTCTT GGGACGATGT GCCTTGTCAC CTGTGCTGGC
  ATCGCCTCCT TATGGTGGCC AGGCCTGCCC TAACCCAGGA TGCTGAACTT CTGGAACCAG
  R
  AGAGGTTGTG CCTCCCTAAC CTGCCAGCTG GAGCAGGAAG ATGAAATCCT ATGATAACCC
  TACTCTTAGT CACAGGGTGG GCACTTGGCC CTGGCATGGG CCCAAAGGCT GCTGTTTTTT
  GAGACAAGAT CATGCATGCA CAATGACACC CGACTCCCAA ATCCCACCAC CTCATCACTG
  TTGAGCCTGC AACCCCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45568397	mCV23464869	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss46739997	NES10998097	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G		G	G	G	G	G	G
ss148082689	ENSMUSSNP5915587	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31761381					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46739997	NES10998097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152548282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605885	regulatory region 605885			362 bp distal
Rr605886	regulatory region 605886			1239 bp proximal