rs31758412 SNP Detail

Summary

• ID
  rs31758412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150131998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC TCACTCTAGG TCTCTTGAGA
  Y
  CTCCCAGATA CTACAAGTCT GGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45568160	mCV23448180	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148045836	ENSMUSSNP6268166	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321427737	CHEV_4_149421650	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31758412					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150131998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	558 bp proximal
Gm13067	predicted gene 13067	654 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	788 bp upstream
Rr605155	regulatory region 605155	164 bp proximal
Rr605156	regulatory region 605156	973 bp proximal
Rr605157	regulatory region 605157	1562 bp proximal
Tssr40363	transcription start site region 40363	650 bp upstream
Tssr40364	transcription start site region 40364	737 bp upstream
Tssr40365	transcription start site region 40365	1632 bp upstream