rs31754689 SNP Detail

Summary

• ID
  rs31754689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59321527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGAGGAGCTC TGAAAGGCTT
  Y
  GGGAAGACGA TGTTAGGTTT CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45567908	mCV23536033	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146401383	ENSMUSSNP2519080	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321140472	CHEV_4_59334399	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31754689					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59321527 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593038	regulatory region 593038			1384 bp distal
Rr593039	regulatory region 593039			within coordinates
Rr593040	regulatory region 593040			1696 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant