rs31753933 SNP Detail

Summary

• ID
  rs31753933
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151191115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT ACTTCCACTG GCAACTGATT
  S
  GTCTGCTTGA TTTGCTCGTG GGAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45567461	mCV23459389	ABI	CRAMUS_MOUSE	f	SNP	C						G		C
ss46723116	NES11005724	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	C		C	C	C	G		G	C	C	G		C
ss148064492	ENSMUSSNP5107185	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss321431592	CHEV_4_150480767	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31753933					SNP	C	G	C	G	C	C	G	C	C	C	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46723116	NES11005724	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151191115 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Cpgi15366	CpG island 15366			673 bp proximal
Gm46899	predicted gene, 46899			926 bp downstream
Rr605507	regulatory region 605507			within coordinates
Rr605508	regulatory region 605508			438 bp proximal
Rr605509	regulatory region 605509			1908 bp proximal
Tssr44784	transcription start site region 44784			1586 bp downstream
Tssr44785	transcription start site region 44785			1796 bp downstream