rs31752143 SNP Detail

Summary

• ID
  rs31752143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55832291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAATGG GAGAAGAAAA
  ATTAGCATAT GTGTGAAGAA ATTGGGAACT AATAGAAACC CTTCCTGGTG GCAGGATTCT
  CTAGAAAAAA AAATGGTTTG GCAAAGGGAC TGGCAGCAGA AGACCTTAGC AGGGCTGTGG
  GAGTCTGTAG GCTTGTTACT TACAGCTGTC TGGGGCCACA GCTGGGATGC TGGTGGGGAG
  Y
  GAAAGGAGTT TGATCATATG AGGGAGGAGG AGGTTCTTGG AATGGCGACT TTAGCCCTTT
  GCAAAAGTCA GTTTTCCAGA TTATACTTAA AACTTTTTTT TTTTTTTTTT TTTTTTGCTG
  TTTAGAGCAG CAGATATGAC AAAAGGTAAT ACTTGCATAG CTAGGCCAGC CCTCACTGTC
  TGGATCTGAG AGAGATTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49771729	NES12382821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31752143					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771729	NES12382821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55832291 () rs orientation: forward

Symbol	Name	Function Class
Fhl1	four and a half LIM domains 1	Intron
Rr691467	regulatory region 691467	within coordinates
Tssr161005	transcription start site region 161005	367 bp downstream
Tssr161006	transcription start site region 161006	114 bp upstream
Tssr161007	transcription start site region 161007	770 bp upstream
Tssr161008	transcription start site region 161008	870 bp upstream
Tssr161009	transcription start site region 161009	943 bp upstream