rs31752142 SNP Detail

Summary

• ID
  rs31752142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55832520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTTCTT GGAATGGCGA
  CTTTAGCCCT TTGCAAAAGT CAGTTTTCCA GATTATACTT AAAACTTTTT TTTTTTTTTT
  TTTTTTTTGC TGTTTAGAGC AGCAGATATG ACAAAAGGTA ATACTTGCAT AGCTAGGCCA
  GCCCTCACTG TCTGGATCTG AGAGAGATTT GATTTTGATG TGTCACAAAA CTCTACTTCA
  Y
  TGTGACAAAT CCTTCATAAT TGCAGAATGA GCCTGTTGGC CAAACTTCAG CCACCAAGAA
  AATATCTGGG ACAAAACTGT CTGGGCTCTT TCCAAGGACT GAAGCTGCTT CTGTCCACTT
  AAACATTTGA AACAAGTTCA TGAGGGCTGC ATGGGTGCCT GGGGGTAATG ACTTAGCTGT
  TAAGTTTCTG TTCGGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49771728	NES12382822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31752142					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771728	NES12382822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55832520 () rs orientation: forward

Symbol	Name	Function Class
Fhl1	four and a half LIM domains 1	Intron
Rr691467	regulatory region 691467	224 bp distal
Tssr161005	transcription start site region 161005	596 bp downstream
Tssr161006	transcription start site region 161006	111 bp downstream
Tssr161007	transcription start site region 161007	541 bp upstream
Tssr161008	transcription start site region 161008	641 bp upstream
Tssr161009	transcription start site region 161009	714 bp upstream