rs31752139 SNP Detail

Summary

• ID
  rs31752139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55834107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATATAG AGTTTTTGTC
  TTTCAAATTA AATATAATTC TATCATTTTT CCCCTTTCCC TTTTTTTCCT CCATCCTAAT
  TTGGGCATCC TCCAGTTCCC GCATGCTTTC TCTCAAGTTC ACAGCCTCTG GCCTCCTTTC
  CCTTTACTGT CTGTGGAATG TCATTTCTGT GCTCTAGCTG ACGGGACTGG AAGGGTCTTA
  Y
  TTTTCCCAGG GACACAGAAT AAACTGTGTG TTGTGCTTTG ACACTGTGAC CGTGACCTGG
  CCCACGAGAT CAGATGTGTC CTTTTCTCCT TGTGAGATCT GTCTGTTAAC CCGTTTACGC
  TTGAGATTCC GGAGCCTTTT GGATTTCAGG CTTGGGCTGG GGGCTCTCCC CCCTCCTCTT
  ATGTACTTTG GGAACTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49771725	NES12382827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31752139					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771725	NES12382827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55834107 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fhl1	four and a half LIM domains 1			Intron
				Noncoding-Transcript-Variant
Rr691467	regulatory region 691467			1811 bp distal
Tssr161006	transcription start site region 161006			1698 bp downstream
Tssr161007	transcription start site region 161007			1032 bp downstream
Tssr161008	transcription start site region 161008			935 bp downstream
Tssr161009	transcription start site region 161009			864 bp downstream