rs31748493 SNP Detail

Summary

• ID
  rs31748493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TCTATGGCTG GAATTACAGG
  R
  GTTTGCCACC GTATCTGATG ACTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45066246	mCV24953288	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120011677	PARCsnp_1.19917	PARC_SEQ	INBRED	f	SNP			G	A
ss120014597	PARCsnp_1.09966	PARC_SEQ	INBRED	f	SNP			G	A
ss146194019	ENSMUSSNP5064964	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320125797	CHEV_1_174442795	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31748493					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340231 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	585 bp upstream
Gm57108	predicted gene, 57108	609 bp downstream
Gm70635	predicted gene, 70635	409 bp upstream
Rr396590	regulatory region 396590	272 bp upstream
Rr396591	regulatory region 396591	1370 bp upstream
Rr423599	regulatory region 423599	1622 bp distal
Rr423600	regulatory region 423600	1264 bp distal
Rr423601	regulatory region 423601	8 bp proximal
Rr423602	regulatory region 423602	350 bp proximal
Rr423603	regulatory region 423603	539 bp proximal
Rr423604	regulatory region 423604	1340 bp proximal
Rr423605	regulatory region 423605	1475 bp proximal
Tssr302	transcription start site region 302	1335 bp downstream
Tssr10235	transcription start site region 10235	581 bp upstream
Tssr10236	transcription start site region 10236	1457 bp upstream
Tssr15228	transcription start site region 15228	1269 bp downstream