rs31748486 SNP Detail

Summary

• ID
  rs31748486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151764446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGGGGAC TGAGGGGAGC CGGGGGATCC ACAGCACCCA
  AAAGGTGGAA TAAGTTGCCT CTTTTCTCAA AAGCTGAAAG GATGTGACAA CCCTCTCCCA
  Y
  AAGCCTTCTC CCTCTGAGCC CCAAAGTCTT CTGTCACCAG TGGCTTCTTC AGGTTCTTGT
  GCAGTTTATA GGATTAGGGA GGGCCAGCTA AGAGTCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45066238	mCV23125368	ABI	CRAMUS_MOUSE	f	SNP	C		C	C	T
ss145723780	ENSMUSSNP2060462	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31748486					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151764446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
Gm28610	predicted gene 28610			1632 bp downstream
Rr420378	regulatory region 420378			636 bp distal
Rr420379	regulatory region 420379			1334 bp proximal