rs31746656 SNP Detail

Summary

• ID
  rs31746656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132293522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCCAGA TCTGTACTAA
  GTAGATGAAA AGATATCATC AAAACTGTAC TTGTTAGGGG CGGACAGTGA GCCATAGGCC
  AGCTCTGCCC TCACCCTAGT CACCTTGGGT CACTCCATCC GGTCAGTGAA CGTTTAGGCA
  AGGGATTCAC AGTCCCTGGC AGTGATGACC AAATGTGCCT CATGGGCAAG TTTTCCTCCT
  R
  ATTGTTGAGA TGTGATGAGC CTCTGGCATG GCATCAGTTT TATCTTTTTT TTAAAAAGTA
  TCTATCTATG TATATCTATC TATGCATCTA TCTATGTACC TATGTATCTA TGCATCTATC
  TATGTACTTA TGTATCTATG TATACACCTA TGTATCTATG TATCTATGTA TCTATGTATC
  TATGTGTCTA TCTATGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45566683	mCV24230125	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147475436	ENSMUSSNP4199052	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31746656					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132293522 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601016	regulatory region 601016	1914 bp distal
Rr601018	regulatory region 601018	1931 bp distal
Rr601019	regulatory region 601019	699 bp distal
Rr601020	regulatory region 601020	1100 bp proximal
Tssr39389	transcription start site region 39389	843 bp downstream
Tssr43688	transcription start site region 43688	1253 bp downstream
Tssr43689	transcription start site region 43689	1280 bp downstream